ICUCockpit Research Group by University Hospital Zurich and University of Zurich

Dr. Yannick Suter is a PostDoc with extensive expertise in the field of medical imaging and artificial intelligence (AI). His work focuses on the development and application of AI methods for the analysis and processing of medical image data, especially for tumor assessment and automated segmentation. His significant publications include contributions to the creation of large medical datasets such as MedShapeNet, the development of radiomics-based approaches for glioblastoma patients and the application of deep learning for automated quantification of liver volumes.

2024

Orchestrating explainable artificial intelligence for multimodal and longitudinal data in medical imaging
Aurélie Pahud de Mortanges, Haozhe Luo, Shelley Zixin Shu, Amith Kamath, Yannick Suter, Mohamed Shelan, Alexander Pöllinger, Mauricio Reyes
npj Digital Medicine  ·  22 Jul 2024  ·  doi:10.1038/s41746-024-01190-w

2023

Evaluating automated longitudinal tumor measurements for glioblastoma response assessment
Yannick Suter, Michelle Notter, Raphael Meier, Tina Loosli, Philippe Schucht, Roland Wiest, Mauricio Reyes, Urspeter Knecht
Frontiers in Radiology  ·  07 Sep 2023  ·  doi:10.3389/fradi.2023.1211859
A comprehensive dataset of annotated brain metastasis MR images with clinical and radiomic data
Beatriz Ocaña-Tienda, Julián Pérez-Beteta, José D. Villanueva-García, José A. Romero-Rosales, David Molina-García, …, Maria Vidal-Denis, Belén Luque, Mauricio Reyes, Estanislao Arana, Víctor M. Pérez-García
Scientific Data  ·  14 Apr 2023  ·  doi:10.1038/s41597-023-02123-0
PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion
Elias Rüfenacht, Amith Kamath, Yannick Suter, Robert Poel, Ekin Ermiş, Stefan Scheib, Mauricio Reyes
Computer Methods and Programs in Biomedicine  ·  01 Apr 2023  ·  doi:10.1016/j.cmpb.2023.107374

2022

The LUMIERE dataset: Longitudinal Glioblastoma MRI with expert RANO evaluation
Yannick Suter, Urspeter Knecht, Waldo Valenzuela, Michelle Notter, Ekkehard Hewer, Philippe Schucht, Roland Wiest, Mauricio Reyes
Scientific Data  ·  15 Dec 2022  ·  doi:10.1038/s41597-022-01881-7

2020

Radiomics for glioblastoma survival analysis in pre-operative MRI: exploring feature robustness, class boundaries, and machine learning techniques
Yannick Suter, Urspeter Knecht, Mariana Alão, Waldo Valenzuela, Ekkehard Hewer, Philippe Schucht, Roland Wiest, Mauricio Reyes
Cancer Imaging  ·  05 Aug 2020  ·  doi:10.1186/s40644-020-00329-8
Towards MRI Progression Features for Glioblastoma Patients: From Automated Volumetry and Classical Radiomics to Deep Feature Learning
Yannick Suter, Urspeter Knecht, Roland Wiest, Ekkehard Hewer, Philippe Schucht, Mauricio Reyes
Lecture Notes in Computer Science  ·  01 Jan 2020  ·  doi:10.1007/978-3-030-66843-3_13

2018

Fast and uncertainty-aware cerebral cortex morphometry estimation using random forest regression
Yannick Suter, Christian Rummel, Roland Wiest, Mauricio Reyes
2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)  ·  01 Apr 2018  ·  doi:10.1109/isbi.2018.8363752

2017

Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction
Fan Zhang, Pegah Kahali, Yannick Suter, Isaiah Norton, Laura Rigolo, …, Yogesh Rathi, Weidong Cai, William M. Wells, Alexandra J. Golby, Lauren J. O’Donnell
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)  ·  01 Apr 2017  ·  doi:10.1109/isbi.2017.7950633

2016

Automated white matter fiber tract identification in patients with brain tumors.
Lauren J O’Donnell, Yannick Suter, Laura Rigolo, Pegah Kahali, Fan Zhang, …, Pelin Aksit Ciris, William M Wells, Yogesh Rathi, Carl-Fredrik Westin, Alexandra J Golby
NeuroImage. Clinical  ·  25 Nov 2016  ·  pmid:27981029

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